MEDomicsLab-docs
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  • 👋Welcome!
  • 👊Quick start
  • 👀Overview
  • 🧑‍🏫Tutorials
    • 🔵Design
      • Extraction Module
        • Image Extraction Page
        • Text Extraction Page
        • Time Series Extraction Page
        • MEDimage
      • Input Module
        • Feature Reduction Tool
        • MEDprofiles
          • MEDprofiles Viewer
      • Exploratory Module
    • 🟠Development
      • Learning Module
      • Evaluation Module
      • Federated Learning Module
        • Overview
        • Configure database
        • Create pipelines
        • Pipeline results
        • Hyperparameters optimization
        • Merge results
        • Crash tutorial
    • 🟢Deployment
      • Application Module
    • 🛠️Miscellaneous
  • 📄Testing Phase with MIMIC
    • MIMIC data access
    • Step 1: Install and Explore
    • Step 2: Extract Data
    • Step 3: Prepare ML tables
    • Step 4: Explore Data
    • Step 5: Vacations
    • Step 6: Create Model
    • Step 7: Evaluate & Apply Model
    • Step 8: Challenge
    • Wrap-Up
  • 👩‍💻Contributing
    • Our coding standards
    • How to push my modification ?
  • 🤕Troubleshooting
  • ❓FAQ
  • 🤓About us
  • Important Links
    • Official Website
    • 📔Release Notes
    • 🥲Known Issues
    • 😎Project Board
    • 🧬Physionet
  • MEDIA
    • ⚛️MEDomics
    • 👾Discord
    • 😺Github
    • 📺YouTube
  • Forms
    • 🗣️Contact us
    • 📝Report an issue
    • ‼️Join the testing phase
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  • We will install the python environment that will be used by the MEDomicsLab application and then run the MEDomicsLab installer.
  • The MEDomicsLab Application is now installed on your system !

Quick start

Installation of the app

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We will install the python environment that will be used by the MEDomicsLab application and then run the MEDomicsLab installer.

The application was tested on Windows 11.

1. Download the following :

  • Python environment installer for Windows (*-win.zip)

  • MEDomicsLab installer for Windows (*.exe)

2. Unzip the Python environment installer

3. Execute the *.bat

4. Run the MEDomicsLab installer (*.exe)

The application was tested on Ubuntu 20.04 and 22.04.

  • Python environment installer for Ubuntu(*-ubuntu.zip)

  • MEDomicsLab installer for Ubuntu(*.deb)

2. Unzip the Python environment installer

3. Execute the script create_venv_linux.sh from the extracted folder

4. Run the MEDomicsLab installer (*.deb)

The application was tested on Sonoma (14.2) with M1 and M3 chips.

  • Python environment installer for Linux (*-mac.zip)

  • MEDomicsLab installer for MacOS (.dmg)

2. Unzip/Extract the Python environment installer

3. Execute the script create_conda_env_mac.sh from the extracted folder in a Terminal.

4. Run the MEDomicsLab installer (*.dmg) and drag-and-drop the app in your Applications Folder

You need to use the open button from the context menu appearing when control-clicking on the app icon.

The MEDomicsLab Application is now installed on your system !

5. There you go! Have fun!

1. Download the following :

5. There you go! Have fun!

1. Download the following :

5. There you go! Have fun!

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