MEDomicsLab-docs
V0
V0
  • 👋Welcome!
  • 👊Quick start
  • 👀Overview
  • 🧑‍🏫Tutorials
    • 🔵Design
      • Extraction Module
        • Image Extraction Page
        • Text Extraction Page
        • Time Series Extraction Page
        • MEDimage
      • Input Module
        • Feature Reduction Tool
        • MEDprofiles
          • MEDprofiles Viewer
      • Exploratory Module
    • 🟠Development
      • Learning Module
      • Evaluation Module
      • Federated Learning Module
        • Overview
        • Configure database
        • Create pipelines
        • Pipeline results
        • Hyperparameters optimization
        • Merge results
        • Crash tutorial
    • 🟢Deployment
      • Application Module
    • 🛠️Miscellaneous
  • 📄Testing Phase with MIMIC
    • MIMIC data access
    • Step 1: Install and Explore
    • Step 2: Extract Data
    • Step 3: Prepare ML tables
    • Step 4: Explore Data
    • Step 5: Vacations
    • Step 6: Create Model
    • Step 7: Evaluate & Apply Model
    • Step 8: Challenge
    • Wrap-Up
  • 👩‍💻Contributing
    • Our coding standards
    • How to push my modification ?
  • 🤕Troubleshooting
  • ❓FAQ
  • 🤓About us
  • Important Links
    • Official Website
    • 📔Release Notes
    • 🥲Known Issues
    • 😎Project Board
    • 🧬Physionet
  • MEDIA
    • ⚛️MEDomics
    • 👾Discord
    • 😺Github
    • 📺YouTube
  • Forms
    • 🗣️Contact us
    • 📝Report an issue
    • ‼️Join the testing phase
Powered by GitBook
On this page
  1. Testing Phase with MIMIC

MIMIC data access

How to access the MIMIC data (necessary to be part of the Testing Phase)

PreviousTesting Phase with MIMICNextStep 1: Install and Explore

The participation in the Testing Phase will involve the use of data from the . We have already processed the MIMIC data for the purpose of the Testing Phase. To share this processed data with you, we need you to complete the following:

  1. Become a credential user of MIMIC:

  2. Complete the CITI Course:

  3. Sign the following Physionet data use agreements:

    • MIMIC-IV:

    • MIMIC-CXR:

    • MIMIC-IV-ED:

    • MIMIC-IV-Note:

  4. Send us the 5 forms (CITI Course certification + 4 signed data use agreements) to medomics.info@gmail.com

This process will take some time, but we assure you it will be worth it!

We also created a video to help you with this process:


We created a video to help you understand the MIMIC data:

📄
MIMIC database
https://physionet.org/settings/credentialing/
https://physionet.org/about/citi-course/
https://physionet.org/sign-dua/mimiciv/2.2/
https://physionet.org/sign-dua/mimic-cxr/2.0.0/
https://physionet.org/sign-dua/mimic-iv-ed/2.2/
https://physionet.org/sign-dua/mimic-iv-note/2.2/
MIMIC database : Explore tables and fields
MIMIC database, Physionet and CITI Program Tutorial