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Extraction Module

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Last updated 11 months ago

The Extraction Module is divided into four components. The first three are pages dedicated to simple extraction processes on various data types (images, text notes, and time series) using pre-trained models and/or Python libraries. The fourth component is , which is the implementation of a Python open-source package designed for medical image processing and radiomics features extraction.

In the video below, the "HAIM study" refers to

Content

Data

Extraction tools


Overview

Extraction Images

Extraction Time Series

Extraction Text

Last Word

Physionet :

MIMIC-IV Demo database :

MIMIC-IV-Note :

MIMIC-IV-CXR :

Study of Soenksen et al. :

TorchXRayVision :

TSfresh :

BioBERT :

BioBERT weights :

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https://physionet.org/
https://physionet.org/content/mimic-iv-demo/2.2/
https://physionet.org/content/mimic-iv-note/2.2/
https://physionet.org/content/mimic-cxr-jpg/2.0.0/
https://www.nature.com/articles/s41746-022-00689-4
https://github.com/mlmed/torchxrayvision
https://tsfresh.readthedocs.io
https://arxiv.org/abs/1901.08746
https://github.com/EmilyAlsentzer/clinicalBERT
Image Extraction Page
Text Extraction Page
Time Series Extraction Page
MEDimage
MEDimage
the study of Soenksen et al.
Extraction Module Video Tutorial